Molecular Basis of the Kell (Kl) Phenotype

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RAPID COMMUNICATION
Molecular Basis of the Kell ( K l ) Phenotype
By Soohee Lee, Xu Wu, Marion Reid, Teresa Zelinski, and Colvin Redman
K1 (K, Kell) is a strong immunogen; its antibodies can cause
severe reactions if incompatible blood is transfused and may
cause hemolytic disease ofthe newborn in sensitized mothers. K1 is a member of the Kell blood group system, which
is complex, containing over 20 different antigens. Some of
the antigens are organized in allelic pairs of high and low
prevalence whereas others are independently expressed. K1,
which is present in 9% of the population, is antithetical to
the high-prevalence K2 (k) antigen. We have determined the
molecular basis of the K1/K2 polymorphism by sequencing
the 19 exons of the Kell gene (KEL) of a Kl/Kl person. Polymerase chain reaction was performed on genomic DNA isolated fromperipheral blood and the ampliiied products were
either directly sequenced or subclonedand sequenced. Com-
parisonsof Kl/Kl and K2/K2 DNA showed a C to T base
substitution in exon 6 that predicts a threonine to methionine change at amino acid residue 193. This amino acid substitution occurs at aconsensus N-glycosylation site (Asn.
X. Thr) and probably prevents N-glycosylation, leading to a
change in phenotype. The C to T substitution creates a Bsm
I restriction enzyme site, which was tested in 42 different
samples to confirm that this base change identifies the K11
K1 genotype. This test differentiates genotypes, Kl/Kl, K2/
K
2
, and the K l / U heterozygote and should prove useful in
the prenatal diagnosis of K1-related hemolytic disease ofthe
newborn.
0 1995 by The American Society of Hematology.
T
samples. Among blood groups stimulated by alloimmunization, K1 (K) isprobably second onlyto Rh(D) in the Rh
system as an immunogen.
Molecular cloning established that Kell blood group antigens are carried on a 93-kD type I1 glycoprotein." Kell
protein has a short, 46 amino acid, N-terminal domainin
the cytoplasm and a large C-terminal portion, of 665 amino
acids, on theexternal surface of the RBC. All of the carbohydrates are N-linked" and are probably located in 5 sites at
asparagines 93, 115, 191, 345, and 627. Early biochemical
studies suggested thatKell antigens reside on a protein
whose conformation is
largely
dependent on disulfide
bonds.'' Kell protein has 16 cysteine residues, 1 in the transmembrane region and 15 in the external portion.'o Reduction
of RBCs by sulfhydryl reagents results in loss of Kell antigens and exposure of some neo-epitopes.","
The molecular basis of the different Kell phenotypes has
not
been
determined. Expression of Kell protein in
transfected cells using a wild-type cDNA resulted in the
detection of the high-prevalence antigens K2, K7, and K14
but not of the low-prevalence antigens K1 or K3.I3 This
finding indicates that several antigens may be carried on a
single protein and that low-prevalence antigens probably reside on variant proteins. Having studied the structure of the
Kell gene and identified the 19 exons that encode Kell protein,I4 we have now determined the molecular basis of the
KUK2 polymorphism by sequencing the exons of Kl/K1
DNA and comparing them to K2/K2 sequences. A base substitution in exon 6 of the KUK1 genotype predicts an amino
acid change. This base substitution creates a restriction enzyme site that was tested in more than 40 different samples
to confirm that the base substitution identifies the KllKl
genotype.
HE KELL BLOOD GROUP system is important in
transfusion medicine because the antibodies can cause
severe reactions to transfusion of incompatible blood and
hemolytic disease in newborn infants. The Kell system is
complex andmorethan 20 different Kell-related antigens
have been identified. Kell antigens appear to be encoded in
five sets of antithetical paired alleles expressing high- and
low-prevalence antigens. Thus, K1 (K) and K2 (k) are products of alleles, as are K3 (Kp"), K4 (Kpb), and K21 (Kp');
K6 (Js") and K7 (Jsb); K17 and K l I ; andK24 and K14.
However, a number of high-prevalence antigens, such as
K12, K13,K18, and K22, are independently expressed.
These relationships and their place in the Kell system have
been established through the years by serologic analyses of
informative families.'.' A recently developed immunologic
test, monoclonal antibody-specific immobilization of erythrocyte antigens (MAIEA), which usesmonoclonal antibodies
to different Kell antigens, indicates that different antigens
occur in spatially distinct regions of the glycoprotein. Thus,
Kl/K2 and K6/K7are close together, whereas K3/K4 epitope
is in a different location and K18 is in yet another protein
domaim6 Inheritance is autosomal and codominant and KEL
has been mapped to chromosome 7q33.'~'
An antibody to K1, named Kell after its propositus, reacts
with approximately 9% of randomredblood
cell (RBC)
From the Lindsley F. Kimball Research Institute of the New York
Blood Center, New York, NY;andtheRh
Laboratory, Department
of Pediatrics, University of Manitoba, Winnipeg,Manitoba, Canada.
Submitted October 17, 1994; accepted November 16, 1994.
Supported in part by National Institutes of Health Grant No.
HL35841 and the Starr Foundation (to C.R.), and by MRC Grant
No. MA3391 and the Children's Hospital Research Foundation (to
T.Z.).
Address reprint requests to Colvin Redman, PhD, The New York
Blood Center, 310 E 67 St, New York, NY 10021.
The publication costs of this article were defrayed in part by page
charge payment. This article must therefore be hereby marked
"advertisement" in accordance with 18 U.S.C. section 1734 solely to
indicate this fact.
0 1445 by The American Society of Hematology.
0006-4971/95/8504-0033$3.00/0
912
MATERIALS AND METHODS
DNA preparation. DNAwas prepared from peripheral blood
obtained from 42 persons whose Kell phenotypes have been determined serologically. DNA was prepared either from 1 to 5 mL of
whole blood collected with anticoagulants or, when RBCs were
removed by centrifugation at 1,OOOg for IO minutes, from the resulting buffy coat. In both cases, the procedure described by John
et a1" to prepare DNA was used. Seven of the DNA samples were
Blood, Vol 85,No 4 (February 15). 1995: pp 912-916
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KELL ( K I ) PHENOTYPE
913
obtained from Canadian Hutterites and serologic studies of these
families indicated that they were homozygous for either K1 or K2.
In these samples DNA was isolated as described.'6
Approval for these studies was obtained from the Institutional
Review Board of the NewYork Blood Center and the HumanEthics
Committee of the University of Manitoba. Persons were informed
that samples were obtained for research purposes and that their
privacy would be protected.
Polymerase chain reaction(PCR). The following denaturation,
annealing, and polymerization steps were performed in an automated
thermocycler (Minicycler; MJ Research Inc. Watertown, MA): an
initial cycle of 94°C for 3 minutes, 62°C for 1 minute, and 72°C for
30 seconds; in cycles 2 through 30, the conditions were 94°C for
30 seconds, 62°C for 30 seconds, and 72°C for 30 seconds; in the
last cycle, the polymerization step at 72°C was extended to 10
minutes. The final concentrations of reagents were 50 mmoVL KCI,
IO mmoVL Tris-HC1 (pH 9.0), 3 mmoVL MgCI2, 350 nmol/L of
each primer, 200 pmoVL of each dNTP, 0.1% Triton-X100, 100 to
200 ng genomic DNA, and 2.5 U of taq polymerase in a final volume
of 100 pL. The "hot start" method using Ampliwax from Perkin
Elmer (Branchburg, NJ) was used. The amplified PCRproducts were
separated by electrophoresis on 0.8% agarose gels and detected by
ethidium bromide staining.
DNA sequencing. The PCR products, separated by electrophoresis on low 2.8% melting agarose, were eluted, ligated to pT7Blue
(R) plasmid vector, and transformed in DH5aF' strain Escherichia
coli. Plasmid DNA was prepared in a small scale by the alkali lysis
method andpurified with a Quick Spin (Sephadex G50) column.
Standard molecular biology procedures were used." DNA sequencing was performed by an automated system (Model 373A, Version
1.2.0; Applied Biosystems, Foster City, CA).
Restriction enzyme digestion. Bsrn I was added directly tothe
final PCR reaction mixture. The PCR mixture (10 pL) was optimized
for Bsrn I digestion by adding 2 pL of 35 mmol/L MgCI,, 1 pL of
10 mmom mercaptoethanol or 10 mmoVL D m , 1 pL of 1OX Bsm
I buffer, 4 pL of water, and 2 pL of 5 U/mL Bsrn I. Incubations
were performed for 90 minutes at 65°C. The DNA in the reaction
mixture was analyzed by electrophoresis in 0.8% agarose.
Otherreagents.
Taq DNA polymerase and dNTPs were purchased from Promega (Madison, WI). X-Gal was from Appligene
Inc (Pleasanton, CA). The DNA I-kb ladder standards, DHSaF'
strain E coli competent cells, and low melting agarose were from
Bethesda Research Laboratories (Gaithesburg, MD). T4 DNA ligase
and Bsrn I were from New England Biolabs (Beverly, MA).pT7
blue (R) plasmid vector was from Novagen (Madison, WI) and
Quick Spin Column (G-50 Sephadex) for DNA purification was
from Boehringer Mannheim (Indianapolis, IN).
RESULTS
Comparison of K1 and K2 DNA sequences. Nine pairs
of forward and reverse primers were used to amplify the 19
KEL exons. The sequences of the primers and the target
exons are shown in Table 1. Genomic DNA from a homozygous K1 person was used as template DNA. In all cases,
single products ranging in sizes from 0.48 to 1.5 kb were
obtained (Fig 1). All of the PCR products were sequenced
and compared with that of K2
The sequence of
K1 DNA encoded identical amino acids to those of K2 DNA,
except for a single-base change in a PCR product that spans
exons 5 and 6. In this PCR product, which was 740 bp
in length, there was a single cytosine (C) to thymine (T)
substitution, predicting a threonine to methionine change at
a consensus N-glycosylation site (Asn. X. Thr).This difference between K1 and K2 occurs in exon 6 (Fig 2). Because
this was the only difference between K1 and K2 encoding
changes in amino acids, it suggested that the threonine to
methionine change would prevent N-glycosylation at asparagine 191 in proteins expressing K1, thus identifying the K1/
K2 polymorphism.
Confirmation of KUK2 polymorphism by Bsm I analysis.
The C to T substitution creates a new restriction enzyme site
with specificity for Bsm I. To confirm that this base change
identifies the K1 genotype, this region was analyzed in 42
Table 1. Primers Used in PCR of KEL Exons
PCR
1
2
3
4
5
6
7
8
9
Primers
5'-CAG TCC TCC GAA TCA
GCT
CCT AGA-3'
5"CTC l T G GCT CCA GAG AGT TCC CAT-3'
5"GAA
GGT
GGG
GAC
CAA
AGT
GAG
GAA-3'
5'-ACA GGG TTT GGA GCA GTC ATG GTC-3'
5 " l T AGT CCT CAC TCC CAT
GCT
TCC-3'
5"TAT CAC ACA GGT GTC CTC TCT TCC-3'
5"ATA l T C CCC ACC TCC CCA CAC CTG-3'
5'-ATC TAC GGT GCT CAG GCTCTC CTC-3'
5"GGA
AGC
ATG
GGA
GTG
AGG
ACT
AAA-3'
5"TGG CAT CCA TGG TAC CTC ATG GAA-3'
5"GAG GCT TTT 11
GAA ACC
TGA-3'
CCA GGA
5"lTC CCC AGC CAC CTG CCA TCT CAT-3'
AAG
TTT
CAGTCC
GGTAAG
CTG-3'
14,
13,
5"CCC
5"GGG C l T A l TTGA CCC CCA GAA TCT-3'
5"CCT AAT CCC
ATG
TGG
CCT GCC TGT-3' 17, 16, 15,
5"CAG TGA GGA CAT CTG CAG AAG AGG-3'
GGA
5"TCC TGT
CCC TCC CCC
19*l T C AAT-3'
5"GGG CGG AAG CCA AGT GCC AGC TTT T-3'
Approximate Size of PCR Product (kb)
Target Exons
1, 2*
0.48
2*, 3, 4
1.o
5, 6
0.74
7. 8. 9
0.8
10
1.2
1.3
12,
14*,
15
1.4
18
1.5
0.33
The first primer is the forward sequence and the second is the antisense primer. The 2 G bases at the 5' end of antisense primer of PCR 9
are not in the gene and were added to create an Smal site for another purpose. The PCR products of exons 1 (PCR 1) and 19 (PCR g) contain
the entire translated regions. Exon 2 was spanned by overlapping PCR products (PCR f and 2) and exon 14 was covered by PCR7.
* PCR products that did not cover the entire exon.
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LEE ET AL
914
KVK2 heterozygotes (lanes 6 and 7) can be easily distinguished from the K1 homozygotes because the 740-bp band
of KUK2 is more pronounced than its split products of 540
and 200 bp.
1 2 3 4 5 6 7 8 91011
DISCUSSION
4 1.6 Kb
4
1.OKb
4
0.5 Kb
Fig 1. PCR amplification of KEL exons. Genomic K1 DNA was amplified with 9 sets of primers that cover the open reading frames of
the KEL exons. The PCR productswere separated by electrophoresis
on 0.8% agarose gels and stained with ethidium bromide. The primers used and the spanning regions are described in Table 1. Lanes 1
and 11 are l-kb DNA ladder standards; lanes 2 through 10 contain
PCR products of PCR 1, 2,3, 4, 5, 6, 7, 8, and 9, respectively.
different persons of known KI/K2 phenotype. Included in
these samples were DNA from 7 Hutterites, because family
studies indicated their Kell genotypes. All other samples
were from unrelated persons. The 740-bp PCR product that
spans exons 5 and 6 (PCR 3, Table 1) was treated with Bsm
1. A KI/KI genotype should yield two fragments, of 540
and 200 bp; the K2/K2 genotype will yield the uncut 740bp PCR product and KI/K2 heterozygotes should yield 3
fragments of 740, 540, and 200 bp.
Of the 42 DNA samples tested, 12 were either K I or K2
homozygotes, 6 were KI/K2 heterozygotes, and 24 were KI , K2 phenotypes but contained low-prevalence or rare Kell
phenotypes. These phenotypes includedK3,K6,KIO,
KO
(null), a K14/K24 heterozygote, and a McLeod phenotype.
In 40 of the 42 cases, the Bsm I genotyping agreed with the
Kell phenotypes that were determined by serologic analysis
of RBCs. In 2 cases, genotyping identified one of the samples
as K2/K2 and the other as a KI/K2 heterozygote and these
2 samples were serologically identified as having “weak”
K1 phenotypes.
None of the other low-prevalence or rare Kell phenotypes
listed above had the C to T base substitution in exon 6,
indicating that this change is specific for the KI/K2 polymorphism. Examples of selected results are shown in Fig 3. In
some cases (lanes 3, 4, and17). the K1 homozygotes, in
addition to showing bands at 540 and 200 bp, contained a
faint bandat 740 bp caused by incomplete digestion. The
Approximately 9% of the population has the K1 RBC
phenotype and antibodies to K1 are developed in about 5%
of persons receiving a single unit of incompatible blood.IK
Hemolytic disease of the newborn (HDN) is usually associated with maternal alloimmunization to Rh(D), but K1 incompatibilities can also cause severe HDN.’9-24Determination of the molecular basis of the KVK2 polymorphisms
will allow genotyping from DNA samples and should prove
useful in prenatal diagnosis.
The most prevalent Kell phenotype is K:-1,2,-3,4,-6,
7,9,11,12,14,18,19,22. We have, in a previous study, defined
the 19 exons of the KEL gene of a person with common
Kell phenotype, but the molecular basis for the K1 genotype
was notknown.I4 Polymorphic differences are caused by
differences in amino acid sequence that may be caused by
point mutations, gene rearrangements, or alternative splicing.
To determine the molecular basis of KI/K2 polymorphism,
we designed a series of primers that would amplify the 19
exons of KEL and compared the DNA sequences of Kl/Kl
and K2/K2 DNA. The only base change that would encode
a different amino acid was found in exon 6 and changed a
threonine to a methionine at a consensus N-glycosylation
motif (Asn. X. Thr “* Met). This change would prevent Nlinked glycosylation at this site. Based on the amino acid
sequence of Kell protein of common phenotype, there are 6
possible N-glycosylation sites at asparagine residues 93, 1 15,
191, 345, 627, and 724. However, the asparagine at position
724 is probably not glycosylated because it ispart of a
sequence Asn. Pro. Ser and the presence of proline between
asparagine and serinehheonine inhibits N-glycosylation.2s
Changing threonine to methionine at position 193 would
prevent glycosylation at asparagine 191. Thus, K1 protein
would be composed of 4 instead of 5 carbohydrate moieties.
Assuming an average molecular size of an N-linked oligosaccharide to be about 2.5 kD, the K1 protein should be 90.5
kD as compared with the 93-kD proteinthat carries the
common Kell phenotypes.” This difference in size is difficult
to detect by sodium dodecyl sulfate-polyacrylamide gel electrophoresis because glycoproteins tend to migrate as diffuse
K2
185
K1
-
TrpThrser
TQQ ACTTCC
Leu Asn Phe A m APO TM Leu Arg LOU LeuYetser
TTA M C TTT M C ’X4 ACQ CTQ AOA CTTCTQ ATG AGT
TQQ ACTTCC
Trp Thr Ser
TTA M C
19s
l
m M C ‘X4 AT0 CTQ AOA CTTCTQ ATG AQT
Leu Asn Phe ASn APO #at Leu Arp Leu LeuYetSer
Fig 2. C t o T substitution in exon 6 encodes a threonine to methionine change. PCR 3 (Fig 1 and Table 1) that spans exons 5 and 6
had a singlebase difference when compared with K2 DNA. The base
sequences of a portion of exon 6 and the amino acids that they
encode are shown. The sequence of K2 DNA is on the top and K1
DNA on the bottom. The C to T substitution is marked in bold letters
and is highlighted with an arrow. An N-linked glycosylation motif in
K2 and the disrupted motif in K1 are underscored.
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KELL ( K t ) PHENOTYPE
915
1 2 3 4 5 6 7 8 9 10 11121314151617181920
4740 bp
4 540 bp
4200 bp
Fig 3. Bsm I analysis of K1 and K2 genotypes and other Kell-related samples. PCR 3 (740 bp1 was prepared from DNA obtained from various
Kell phenotypes. The samples were treated with Bsm I and separated by electrophoresis on 0.8% agarose gels. Lanes 1 and 20 contain l-kb
ladder DNA standards. Lane 2 is untreated PCR3 from K1 homozygotes. Lanes 3 through 19 are treated with Bsm 1. Lanes 3 and 4 are K1
homozygotes; lane 5 is K2 homozygote; lanes 6 and 7 are Kl/K2 heterozygotes; lane 8 is a common K:-12 phenotype; lane 9, KO; lane 10,
K1.2; lane 11, K:-12,3,-4; lane 12, K:-1,2,6,-7;
lane 13, McLeod; lane 14, K:-1.2.10; lane 15, K:-l2,14,24; lane 16, K:12; lane 17, K:l,-2; and
lanes 18 and 19, K-1.2. All K2 samples gave uncut 740-bp products and K l l K l yielded 540- and 200-bp fragments. Kl/K2 heterozygotes had
3 bands, the uncut 740-bp and the smaller 540-bp and 200-bp products.
bands. Nevertheless, analysis by Western immunoblots, using rabbit antibody to a synthetic peptide derived from the
cytoplasmic domain of Kell protein,I3 indicated that K1 protein migrates slightly ahead of the Kell protein that carries
common Kell phenotypes (data not shown). Lack of a carbohydrate side chain may expose different parts of the protein
leading to immunogenicity. This is another example of loss
of glycosylation in an RBC surface protein leading to a
change in blood group phenotype. The Webb glycophorin
C variant also lacks an N - g l ~ c a n . ~ ~ , ~ ’
The point mutation from C to T in exon 6 creates a new
restriction enzyme site, 5’-GAATGCT-3’, that can be cut by
Bsm I. This restriction enzyme digestion allows the differentiation of KI/KI and K2/K2 homozygotes and of KUK2
heterozygotes and should be useful as a diagnostic genotype
procedure. A possible drawback is that, in very rare cases,
RBCs do not express any Kell antigens. In this phenotype,
known as Ko(null), the RBCs appear not to have any Kell
protein on the RBC membrane. Yet, preliminary experiments
in our laboratory indicate that 2 KO persons contain Kell
mRNA in peripheral blood and thatthe sequence of the
mRNA from the initiation ATG codon to the poly A tail is
identical to mRNA obtained from persons with common Kell
phenotype. This finding indicates that the base sequences in
the 19 exons of K2 and of some KO persons are identical.
Therefore, PCR amplification of exon 6 and genotyping by
treatment with Bsm I would indicate a K2 genotype in KO
persons. Serologic analysis easily detects the KO homozygote, but the KO heterozygotes would be serologically identitied as K2 or K1 and Bsm I analysis would also not discriminate. Presumably the same would occur in theKmod
phenotypes in which expression of all Kell-related antigens
are weakened.
The PCRmethod described could easily be applied to
DNA samples obtained from amniotic fetal cells and should
prove useful in determining the K1 and K2 genotypes of the
fetus. This test can potentially identify those pregnancies at
risk for hemolytic disease of the newborn.
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1995 85: 912-916
Molecular basis of the Kell (K1) phenotype
S Lee, X Wu, M Reid, T Zelinski and C Redman
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